Flinders University
Browse

sorry, we can't preview this file

bacillus_unknown_3mervectors.pkl (3.62 MB)

Bacillus Unannotated Protvec Model

Download (3.62 MB)
Version 3 2022-05-21, 02:00
Version 2 2022-05-19, 02:49
Version 1 2022-05-16, 05:04
dataset
posted on 2022-05-21, 02:00 authored by Susie GrigsonSusie Grigson, Jody C. McKerral, James G Mitchell, Robert EdwardsRobert Edwards

Protvec model  trained using 425,000 sequences from the Genome Taxonomy Database (GTDB). Sequences were dereplicated at 70% using CDHIT and filtered to remove sequences containing 'X', sequences shorter than 30 amino acids and sequences longer than 1024 amino acids. 


Training used a vector size of 100 and a context size of 25 to produce a dictionary object containing a 100-dimensional vector for each 3-mer present in the training data. 


Model is stored as a .pkl file which can be imported using the Python pickle module.  

History

Primary contact

susie.grigson@flinders.edu.au

Usage metrics

    Flinders University

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC