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bacillus_carbohydratemetabolism_3mervectors.pkl (3.35 MB)

Bacillus Carbohydrate Metabolism Protvec model

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posted on 21.05.2022, 01:59 authored by Susie GrigsonSusie Grigson, Jody C. McKerral, James G Mitchell, Robert EdwardsRobert Edwards

Protvec model  trained using 8,743 sequences from the Genome Taxonomy Database (GTDB). Sequences were filtered to remove sequences containing 'X', sequences shorter than 30 amino acids and sequences longer than 1024 amino acids. 

 

Training used a vector size of 100 and a context size of 25 to produce a dictionary object containing a 100-dimensional vector for each 3-mer present in the training data. 


Model is stored as a .pkl file which can be imported using the Python pickle module.

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Primary contact

susie.grigson@flinders.edu.au