Genomic and occurrence datasets for comparative phylogeography of pygmy perches

Datasets associated with Buckley <i>et al. </i>2022 "Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change." <i>BMC Ecology and Evolution.</i><div><br></div><div>Both_species_SDM_occurrences.csv = occurrence data used for ensemble species distribution models for <i>Nannoperca australis </i>and <i>Nannoperca obscura</i>.</div><div><br></div><div>SPP_species_concatenated.phy = concatenated alignment for 44 <i>Nannoperca australis</i> and <i>Nannoperca vittata</i> (phylogenetic outgroup) of 19,428 species-wide ddRAD loci.</div><div><br></div><div>SPP_species_SNPs.str = genotypes for 44 <i>Nannoperca australis</i> and <i>Nannoperca vittata</i> (phylogenetic outgroup) at 17,389 'unlinked' (one per RAD locus) SNPs.</div><div><br></div><div>SPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 9 populations of <i>Nannoperca australis</i>.</div><div><br></div><div>YPP_species_concatenated.phy = concatenated alignment for 33 <i>Nannoperca obscura</i> and <i>Nannoperca vittata</i> (phylogenetic outgroup) of 21,051 species-wide ddRAD loci.</div><div><br></div><div>YPP_species_SNPs.str = genotypes for 33 <i>Nannoperca obscura</i> and <i>Nannoperca vittata</i> (phylogenetic outgroup) at 15,715 'unlinked' (one per RAD locus) SNPs.</div><div><br></div><div>YPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 5 populations of <i>Nannoperca obscura</i>.</div>