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Genomic and occurrence datasets for comparative phylogeography of pygmy perches

dataset
posted on 13.01.2022, 06:21 by Sean BuckleySean Buckley, Chris BrauerChris Brauer, Michael Hammer, Peter Unmack, Luciano B. Beheregaray
Datasets associated with Buckley et al. 2022 "Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change." BMC Ecology and Evolution.

Both_species_SDM_occurrences.csv = occurrence data used for ensemble species distribution models for Nannoperca australis and Nannoperca obscura.

SPP_species_concatenated.phy = concatenated alignment for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) of 19,428 species-wide ddRAD loci.

SPP_species_SNPs.str = genotypes for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) at 17,389 'unlinked' (one per RAD locus) SNPs.

SPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 9 populations of Nannoperca australis.

YPP_species_concatenated.phy = concatenated alignment for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) of 21,051 species-wide ddRAD loci.

YPP_species_SNPs.str = genotypes for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) at 15,715 'unlinked' (one per RAD locus) SNPs.

YPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 5 populations of Nannoperca obscura.

History

Primary contact

sean.buckley@uwa.edu.au