Prophage locations and Gene Content

<p dir="ltr">A list of the locations of all the prophages found by PhiSpy in all the genomes we searched. This table also contains a count of the number of <code>phage</code> genes and the total number of genes.</p><p dir="ltr">Columns in this file</p><ol><li>Assembly accession ID, as used by <a href="https://ftp.ncbi.nih.gov/genomes/genbank/bacteria/" rel="noreferrer" target="_blank">GenBank assembly</a></li><li>Genome Description</li><li>Contig name from the genome assembly</li><li>Start on the contig</li><li>End on the contig</li><li>Prophage name (the contig, plus PP and a sequential number)</li><li>How many phage genes (see below)</li><li>How many total genes</li></ol><p dir="ltr">Phage genes are defined as including one of these words:</p><ul><li>'integrase'</li><li>'phage'</li><li>'lysin'</li><li>'endolysin'</li><li>'holin'</li><li>'capsid'</li><li>'tail'</li><li>'bacteriophage'</li><li>'prophage'</li><li>'portal'</li><li>'terminase'</li><li>'tapemeasure'</li><li>'baseplate'</li><li>'virion'</li><li>'antirepressor'</li><li>'excisionase'</li><li>'tape measure'</li><li>'Cro-like repressor'</li><li>'CI-like repressor'</li><li>'rIIA lysis'</li><li>'rI lysis'</li><li>'rIIB lysis'</li><li>'base plate'</li><li>('head' and 'decoration')</li><li>('helix' and 'turn')</li><li>'HNH endonuclease'</li><li>'single stranded dna binding protein'</li></ul><p dir="ltr"><br></p>