Prophage statistics

<p>The presence of prophages in bacterial genomes. </p> <p><br></p> <p>This file has these columns:</p> <p>0. GENOMEID - Genbank genome assembly accession</p> <p>1. Genome Name - Definition of the genome in the genbank file</p> <p>2. Contigs > 5kb - Number of contigs longer than 5 kb (only these were used to predict prophages)</p> <p>3. Genome Contigs - Total number of contigs in the genome</p> <p>4. Number of Coding Sequences - Total number of coding sequences in the genome</p> <p>5. Too short - Number of phage predictions that were too short (less than 5 genes in the prediction)</p> <p>6. Not enough phage hits - Number of phage predictions that did not have a single HMM match to VOGdb version 99</p> <p>7. Kept - Number of high quality prophage predictions</p> <p>8. Note - Outcome of the computation. You should read this column, especially if the sum of prophage predictions is zero</p>