Predicted prophage like regions in bacterial genomes

<p>This file contains all the predictions about prophages, whether or not they were finally used.</p> <p><br></p> <p>This file is 447M and contains the following information in a tab separated text file:</p> <p>0. GENOMEID - Genbank genome assembly accession</p> <p>1. Contig - Contig ID in the genome assembly</p> <p>2. Start - prophage start position</p> <p>3. Stop - prophage end position</p> <p>4. Length - length of the prophage ((end-start)+1)</p> <p>5. #CDS - number of coding sequences in the prophage</p> <p>6. Decision - Whether the prophage is predicted or kept. See below.</p> <p><br></p> <p>The decision field has three options: Too short (<5 genes), no genes with homology to any known phage gene, or Kept. The latter means that phispy believes that it is a prophage region.</p> <p><br></p>